Scaffold Ga0209229_10034291

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10034291
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2232
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F002935	Metagenome	519	Y
F003422	Metagenome / Metatranscriptome	487	Y
F013892	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100342913	F002935	AGGA	MSERTKGYIGTIVDGQKLAEIANDIYRLQYSNDFSPCTVDGLLFVELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDRTEDISDYIRVFGSRLDNNCSLWQSKMSVAPATIAQ
Ga0209229_100342914	F003422	N/A	MTNELVSTKYTFACDPDECDVLIELTSSDGFGFPSGVMEITCPCGRKPVLLSVENATIQPTNQTKEETMSETTIGSDAFHSTAVPYNPDLLVTYKVIHGYSDPEYTTSKVASLEWDLHNARQAQKTNGVLTGKISSVKDIITEAYADSDDQETLRSIAETLGIELTRTVEWTASIEVSGTIELDLLADYDTDLESEITDNLFADSHNGNIEVIDQEVCHVREA
Ga0209229_100342915	F000311	GGA	MYFELTAPNQVAFARATWDAEMIGLDPQAIAPLTFNIGTGSIEKVSRLRDKYNLIESYTSDYEPTGYTGR
Ga0209229_100342918	F013892	GGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLGRLADAVIAARPRWTDTSYATRIAISQLIADQWNMETGW