NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10031595

Scaffold Ga0209229_10031595


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10031595 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2322
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023036Metagenome211Y
F039471Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_100315956F023036GGAGGMANSTVNVNTTQPADWAEFIRNAASVEGIELSAFYGFAAVDRAIAVLGMDPADTWAALSERKRGRPVQYNPKDAPAVKRKRGRANG
Ga0209229_100315957F039471GAGGMDEFYLLVSATRKRAKGSKLRQTPKRATRITRVAKCSFDHDAVAVGGLLAGRWYRIEIYDSPFRGMLDAVFVGVSSDPGIRAAEALAYRMVSGLSLASGVKWEANCGPIDAEDAALLRIELEVV

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