Scaffold Ga0209229_10017365

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10017365
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3080
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033360	Metagenome / Metatranscriptome	177	Y
F053782	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100173654	F053782	GAGG	MNLSNGEKGMFAVIGLCLFSWFFGSSPKPDPTQCDIPSSDLIQQVATVRDSLTVQPAPSDDPKPIPSPSDKPLKLEVLVFLAPKGQKCEPCERWQRLEMKKFMDADWKVGLIDDHPFIPYPRFEIIHGSKRTVHVGFLSFEQAKGLVK
Ga0209229_100173656	F033360	AGGA	MAEAKKENWLPWIVAAVAVFALLRNQQPSSDSRPKELTAVVRQTLPSIRSAYKQAFLEAASKIESGEIKDQEAWTKFIADNAGAKQREALDRVYDAIDKLDLPASFAGKESEIAKINREIAGAW