Scaffold Ga0209229

Basic Information
Taxon OID	3300027805 Open in IMG/M
Scaffold ID	Ga0209229_10013335 Open in IMG/M
Source Dataset Name	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027805 Open in IMG/M

Scaffold ID

Ga0209229_10013335 Open in IMG/M

Source Dataset Name

Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3496
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3496

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (100.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Sandusky Bay, Ohio, USA
Coordinates	Lat. (^o)	41.474889	Long. (^o)	-82.854137	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sandusky Bay, Ohio, USA

Coordinates

Lat. (^o)

41.474889

Long. (^o)

-82.854137

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009503	Metagenome / Metatranscriptome	317	Y
F014089	Metagenome / Metatranscriptome	266	Y
F024931	Metagenome	204	N
F025683	Metagenome / Metatranscriptome	200	Y
F033645	Metagenome / Metatranscriptome	177	Y
F058101	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100133353	F058101	GGTGG	MINPKDIYKATDGKIYSFSGYGGVENCSDCDDFTQVNEYDRQHDGLVMWFCKKCEDRLHL
Ga0209229_100133354	F009503	AGGA	MDKVQFECRICKKITVQLIHKITDNLPQGVEVIQCTKCEVMGVAQIGDSNANL
Ga0209229_100133355	F024931	GGTGG	VKMTLTHAEQMVCMLSAIKWETDTGKTMSNPQRYQKDLSTYEYLVETAEAIGSEWVVAKYFDLPFDPYQQKFKGTADVGNAIEVRWTKYVAGQLIVHEYDRPGDIAVLVTGQAPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSTYGQSAI
Ga0209229_100133356	F014089	GGA	MSDYVEIIYPQSMTAKLMHNGEVIAEYKVAQCDGCALVVKIDAFGYKIGQGGEKLAWLCGGCR
Ga0209229_100133357	F033645	AGGGGG	MAGFLDNYEDVAARIKRLWETHPSARVQNNIIEFNAEKGFILVQTEIFKEYEDEKPSAVDYAFGNVATYNVQMKKFFVEDTVTSSIGRCIGLLLGTDKRPTRQDMEKVETISTTVAKSTADDYDPWSKKFGDVPSFKTAAEAEQSGIPSLGSSMDEVAKQLGGQLVAEAPQCSHGHMIWKQAHEGAPKNWGGYFCTERTKATQCTPRWYVFASDGKWKPQV
Ga0209229_100133358	F025683	GGAG	MVLDLLDPQMLGRLSLVVILMVISAAAGYAKGFKEGKREGMARRKSMIRHAVNKGVN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209229_10013335

Overview

Ecosystem & Geography

Associated Families

Sequences