Scaffold Ga0209229_10010995

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10010995
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3819
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002935	Metagenome	519	Y
F007691	Metagenome / Metatranscriptome	346	Y
F020910	Metagenome / Metatranscriptome	221	Y
F022197	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100109952	F020910	AGAAGG	MWTRYTFVCDPDECDALLEFTARDGYDFPLGVVEMKCPCGRMMNYISYEEAYAPIITDVSKVTPTQVVKIDSNPYN
Ga0209229_100109954	F007691	AGGAG	MNTINDLINEIYEDNYSHLEFDSNMGGEDCDCHIHITLNTMAKYAGIEVG
Ga0209229_100109955	F022197	N/A	MAVQDVSGRGYDSSMTTTQSIEDPSLYAPYYSCDLSISIVNIDAKNIHHAEAVIQTFIDEISKVMDTEVRWDEADWEVVENVYLPELGEWHTR
Ga0209229_100109956	F002935	AGGA	MRERSKGYLGQIVDGKKLAEIANGIYALQYSNDFSKCTVDNLLFITLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCLTDKTEDIADYIRVFGDRLDSNCSLWQSKMSVAEDMIVV