Scaffold Ga0209229_10009402

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10009402
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4106
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003459	Metagenome	485	N
F007748	Metagenome / Metatranscriptome	345	N
F009057	Metagenome / Metatranscriptome	323	Y
F098895	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000940211	F009057	N/A	MPTFRKFAFPDGATADKLLAQFLQPLDFAVQVGEIDKAVCVDILFHDTCPEPLAAFVVWPAPCGVHSFSGWEEQYEADYKEFATPSK
Ga0209229_100094022	F003459	N/A	MNHLVTIPKSDISKQDIADIAAGLILRIEEGGVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYQHDQVWSDLQASMKAREELLKMAFRNAGKATVYDESTGEAVPVCPAKGTKPSIAVTFKAS
Ga0209229_100094023	F098895	N/A	MANLLTQCNADVYKAILDKKSETPEIGEKFISILQAHEYLWQITLSEMLVFSAYLPWPIWDRKVHTFYLLFESQQTTQMP
Ga0209229_100094029	F007748	GAG	VNLLETTIIGTISAIVGGAVAWLTRGRFTADSLQVKQAQAVLAMWQETAEAQKKELTELRNEIVSLRERIESLENTIQQLEAENATLKSQR