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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027805 Open in IMG/M |
| Scaffold ID | Ga0209229_10006566 Open in IMG/M |
| Source Dataset Name | Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4857 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sandusky Bay, Ohio, USA | |||||||
| Coordinates | Lat. (o) | 41.474889 | Long. (o) | -82.854137 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007029 | Metagenome / Metatranscriptome | 359 | Y |
| F023592 | Metagenome / Metatranscriptome | 209 | Y |
| F029049 | Metagenome / Metatranscriptome | 189 | Y |
| F066777 | Metagenome / Metatranscriptome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209229_100065664 | F023592 | AGG | MNSLDVLIGLAACGMGFMFMVIGYSIGFKHGHGEGFVRGRAIAKALRDSELI |
| Ga0209229_100065665 | F007029 | GAG | MGFLDNYEDVNARIKRFRSEFPSGRLVAYIESFDIEKGTILVRAEAYREYEDTQPSAVDYAFGNVATYPQNMRKWMVEDTITSSYGRVIGLLTPSLNHNSRPTVQDMEKVETLPADSDPWSTKASIEDMATMASSILEIGKSLGGELVAEAPRCAHGTMVWAEGTAKATGKPWAAYKCTERVRSNQCNPYWHVLGSDGKWKPQV |
| Ga0209229_100065666 | F066777 | GGA | MEAAGIEMGELTFIKDGVATTIHDNGDMTVVNAKRCDQCDQWQTALGGFSYRDVSGEVVIWLCAQCRA |
| Ga0209229_100065667 | F029049 | GAGG | MVMCTMSRVAKVILDRSQEITAHRVGLERTIIRNADPTDASNFGQAYKNWHELVWQESEGAAAEMAVANYFGDYGFVPAIDNGHDTADVGENIEVKWTKHANGHLIIQNRGPGRPNDVAVMVTGFSPVYVLLGWMPISMAKQARYKHPYQDNYWVPRANLFEMQYLKRSNYGDV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |