Scaffold Ga0209229_10006517

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10006517
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4876
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F071250	Metagenome	122	N
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100065173	F012871	AGG	MYGIALPEAQLLQMLHEFIVKHFRWVTFEHFNLAFEMNAANELSKKCEHFGALSVSFIGDVLTCYKPHRDKANLQIQREIAEAIEEKSQQIKENEMAVNDDSWRRMLAEDVESFKQSKFTTLELRGVSMMRWLEESKRITAETFTDDEYNLCKAKARKTVFNEQQLSKGMVERMSDRKRQLVKESIQFEGLRELYKLYLSKQ
Ga0209229_100065175	F091602	N/A	MKSDLTFCPNCDKELLGERVDFVLQDQQFEDWDSAYEFIDDEGEIVLCSDCHEWDYADDDAKGEGWD
Ga0209229_100065178	F071250	N/A	MKKLISLEKRVENLLKKYKTLRNNNKALCVRVWEQQFDERKDITSNFFAMYESGKYVSADNITRIARLVKEHNPELRGTNDKDNKKKAQLIKPLLKR