Scaffold Ga0209229_10006494

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10006494
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4887
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005531	Metagenome / Metatranscriptome	397	Y
F017134	Metagenome / Metatranscriptome	242	Y
F019325	Metagenome / Metatranscriptome	230	Y
F076101	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000649410	F076101	AGG	MYKITLSYDGNAPHWQQDYASEFDAWKDFFAFTDWGFANEYSTVNLYNSEMKCFTRHFYREERKVVTVK
Ga0209229_1000649414	F005531	GGA	MTITYTLWQGSQLLAVNQKANKPEEILAVIAELNKLGKGFTYNIREVDTTK
Ga0209229_1000649417	F019325	AGGAG	MTQLTESLFNTIVHDYYNGGVKSSYGLDAYTRKEVLLYLIRSTQCNCIECI
Ga0209229_100064945	F017134	GGA	MELFTVACLNYEICGDEATFDSVEEYEIYGDDYVCAECYADEEYNFFETVGWSDADALASAGHGMDEDY