Scaffold Ga0209229_10004970

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10004970
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5555
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003377	Metagenome / Metatranscriptome	490	Y
F039989	Metagenome	162	Y
F066715	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100049702	F066715	AGGAG	MADNILSRKNRDIDITLHTATSLATTLDLRDVAGAVVSFGTMSTSASTLQMWVGTTSAGTFRRLYKVDGSVADLTLAASSTDGRAYALPDEVFAAEYLKIVSGTTNSTGTAGIVMLKS
Ga0209229_100049705	F003377	GGAGG	MTDAVKDTMYGIIERWGFPTLVAMACGWVLRQDVLLPLVEEHRSFVKSLSETQREISKAVSEQTRLLYALQPRAGDEPPQN
Ga0209229_100049707	F039989	GAGG	VRFLLCLVVVLIGCVATLPEDHTLSADIACETARMVVQLRHEIAPTPVSDKCENCDGTGKIGDRANIVMTCHVCGGTGKKMKSVCKDCPK