Scaffold Ga0209229_10004786

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10004786
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5653
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008546	Metagenome / Metatranscriptome	331	Y
F015337	Metagenome / Metatranscriptome	255	Y
F024553	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100047862	F015337	N/A	MKTITMKPVEFYHFRQLAFAMSIAFACTIAQGVYIVEANIDQLEKLGY
Ga0209229_100047863	F008546	N/A	MKDKITWWKLLIVFVSAIFLEANSIAGFRFLMDKNWYGMISMVFINPFLCLPMNHYTIEVKTFKGRFIIALAFALGFSVGVLTIRPYFI
Ga0209229_100047867	F024553	N/A	MAKLNEEIQKVIDNASDVLYREEIYINDRHEYDYHKLQATPDVEVHTLYFSDDDSWADNIKKQVAMQLVDNGDGIEIIGACTKKHLNYLEAEQLHILLRLSSTHCVYQITEPAVKKEF