NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10004725

Scaffold Ga0209229_10004725


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10004725 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5690
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F003267Metagenome / Metatranscriptome496N
F021095Metagenome220N
F075860Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209229_100047251F075860N/AMSVTLIAYPTATFIDDLTAWNNFNTRATADGADAVEAACFDCLYLRFAGLNGMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGALSS
Ga0209229_100047252F021095N/AMSITVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPSLTQTGFVDHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELATWSLNPYFRIGSSFNSVRPLTTPTAFTVYHGGRNFLAINGTKYTTVSANDTFLVSAQVAYKGVDYNFAVSPSLSGTTDFNIQRFACGPANLSGTISALSGAVEGDSYTVQFLGNAGLGSVQTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0209229_100047255F000557N/AMKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFEAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGLLGWFPKKYDGASHQERAELLKANAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ
Ga0209229_100047258F003267N/AMKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKAVKEILDNSLVAAKIRIVVTRTNAWEQATLTEMYRASQTEDAAYLYAHTKGSSDPSLINQLWCRSMVFFNIVAWERAIAELANVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFVITF

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