Scaffold Ga0209229_10004725

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10004725
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5690
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F003267	Metagenome / Metatranscriptome	496	N
F021095	Metagenome	220	N
F075860	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100047251	F075860	N/A	MSVTLIAYPTATFIDDLTAWNNFNTRATADGADAVEAACFDCLYLRFAGLNGMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGALSS
Ga0209229_100047252	F021095	N/A	MSITVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPSLTQTGFVDHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELATWSLNPYFRIGSSFNSVRPLTTPTAFTVYHGGRNFLAINGTKYTTVSANDTFLVSAQVAYKGVDYNFAVSPSLSGTTDFNIQRFACGPANLSGTISALSGAVEGDSYTVQFLGNAGLGSVQTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0209229_100047255	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFEAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGLLGWFPKKYDGASHQERAELLKANAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ
Ga0209229_100047258	F003267	N/A	MKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKAVKEILDNSLVAAKIRIVVTRTNAWEQATLTEMYRASQTEDAAYLYAHTKGSSDPSLINQLWCRSMVFFNIVAWERAIAELANVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFVITF