NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10004601

Scaffold Ga0209229_10004601


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10004601 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5751
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (55.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002037Metagenome / Metatranscriptome600Y
F003066Metagenome / Metatranscriptome509Y
F011384Metagenome / Metatranscriptome291Y
F019123Metagenome / Metatranscriptome231Y
F030690Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000460111F002037AGGMNKIYWIFIVVMAALAIWGTEKAIGQTTTIYAPDGSVTVCQVNTNGTVICV
Ga0209229_1000460113F011384GGAGMYTKLDDQRQAKFIVKYIQEHPGCSIKDIVQECVVCRARLKYLESQGYFSLPKLTHKDILDRRFKNREYVSVTVGREYGKWIGY
Ga0209229_1000460114F019123GGAGGMVDSKPLTQEEIIKAYKEAFGSGNAVLTLDRIFRFARLIEKAHGVKDVH
Ga0209229_1000460115F003066N/AMVWETEENAHRKDGVLLMAKKEPVAWLYEEFCTKSGDLKKSYLWSFHPKELSYLNDLKNSTHHIKITPLFRGDKFEEYKSMNKYSEATQRLVEANGGL
Ga0209229_100046019F030690AGGAMQRSEVEIICNHMLGRTIVSCEALHGDSTIVIQLDDDSIIEISGEELSLYGELTPMDD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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