Scaffold Ga0209229_10003801

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10003801
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6270
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y
F012975	Metagenome / Metatranscriptome	275	Y
F074876	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000380110	F000473	AGGAG	MASSLFDDKHFKYGINQFTGEPNKPVFYNQTMAKKIKEIKAPVMGLQMDIAKYPDFLAIKLYEDNFIQYQGTKKEMVIDYVLKVKKVIESFGVRCELVGVPSERVL
Ga0209229_1000380111	F074876	GGAG	LGCLVKEYYEIINIIYIHDLKVYGTIDKMGTYASVVKYTKDGIDYKELIENDEFAIVDEIVFEHVEEEK
Ga0209229_1000380112	F000671	GAGG	MEKILCYSCNKSKNKLNVKKSSLLTINLLMCETCITNKIEPRWVVILAGRSMGPEHVREFVLKKRYIGNEIAASELLI
Ga0209229_1000380113	F002060	N/A	MNLNYTSIIIAISAAILSGMGTAIIAGIRDSRKEKIRQREREQDHLKLELKDLKIKLYQVERDLTEWKDKYYSAIQELIEVKANLEETLIRLSLIDMEFHPDQD
Ga0209229_100038015	F003582	N/A	MNTYRVKIEIDAEVEAFSSEDAVDYANDIFGVDDEVKNVKVVSVKEK
Ga0209229_100038018	F012975	AGGA	VLNLTLKGVEVFIEKSKTKNQESYWDNYDLMIWKQDKSGFTNIKGLFRKDTWGVAERISANNEGIWKLPAKYVKHFK