Scaffold Ga0209229_10003354

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10003354
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6635
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F016149	Metagenome / Metatranscriptome	249	Y
F051715	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100033543	F051715	AGG	LLEGNHRLDGYDYPDDEWVYYQMAERFGWTPDQVDDLPAYLSDWLLAIAGTIEQVKADGMRAE
Ga0209229_100033547	F002722	AGGA	MAGRTGVRSTLASFLSAPAITGLNQVFTSFPKRINYQVNSQPGQLTRSAVVIFIVREDENRLAIGGATNGWKRVDYTVILQVFCHSLQRNSEDVMTDFDTLIDNIKTRLRSNHNFGDSTGNLVWQGAEPAIRARYGEPATSNEGATEIFAEIEFDVTQMIQA
Ga0209229_100033549	F016149	GGA	MGRFVAPDKGVKETVIGGKTYNPDRGGIYNVESKRHADAMKREGFFEASLNPYSQGDRQRGFTCVQCGFDGWFRKCGRCGHENESKTPTDGE