Scaffold Ga0209229_10003272

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10003272
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6705
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007688	Metagenome / Metatranscriptome	346	Y
F012456	Metagenome / Metatranscriptome	280	Y
F057380	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100032725	F057380	N/A	MAEIYVNSNSPVRTKIYWQGELVSPSGSVTAKVYDVTQSITSNVNPNTILITLTATAVETDAGTYQVILPFSYTANPRRLKLVWEYVVSPGSTGTHTTYLNVITPYISINEQIDDLNFGSDPSDPNYKTYGDLQSAERYARKIIEDYTGQDFYLYTDNQVIYGDESDTLPLSSKLNKIYQLYSNDILLVNNLVNPPVNNWLYDPVVSESGFAIRVNRTNLLDNAVYVANGLVPPTINDTFNGVFSKNVQYKVVGEFGWETVPDAVQLATIELMKDYFSKDKTWRNKYIKSIKTFDWSFEYNSSASSGTGNLYVDQLLTPYVITQMVLI
Ga0209229_100032727	F012456	GGAG	LDNSVALIQASSGLERLMAGSVPGVITDSTVAQISAFLYYEASVLSKLTRNAEFASLFKKTIFNQIDKDFGQYIDAQARSKPKALHHVYEWNKVGSPAHRLFNLTLVDQPGLSFRISRDFKLSKSSVPSKNKKQKKKYVFANKASVIEVGMPVVIRPRSAERLVFELDGRTVFMPKGSSVVVKRPGGTAATNQFSLSYGRFFGGQLVNSSIKASGFQRIFNSAMSKALAVPINIRKVQYSFSAGKIRMQADSALRASFGGAL
Ga0209229_100032728	F007688	GGAGG	MTADYKIDAMFELRKFLWKELKLAGMFNENDYYSDNLGREVLPIIPVQQLPEMDQFLSGKKHIVYDKIGLSYEENWMICCEKV