Scaffold Ga0209229_10002039

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10002039
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8260
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F003603	Metagenome / Metatranscriptome	477	Y
F004666	Metagenome / Metatranscriptome	428	Y
F024786	Metagenome / Metatranscriptome	204	Y
F026195	Metagenome / Metatranscriptome	198	Y
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000203910	F001460	GAGG	MLGYTEEDLNRMINAIHDVKLFYLRSPSDLMNKDPLVKDLQDAVSFMQGLWAEGYFD
Ga0209229_1000203912	F092053	AGG	MKLSSEVKEDLQDQADQIIYFESAMSNEDKASKAVYQRLVEIYKVAYEAGVNSK
Ga0209229_1000203913	F000263	AGGAG	MIPDTLELPAHLQRMVDAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARNEA
Ga0209229_1000203915	F000441	AGGAGG	MKMSDPYIDEQLSKAQKLLWGGSETENIEAHNIISKLIRDRMSEQEGQNV
Ga0209229_1000203916	F001019	AGGAGG	MSNYGPSLEILEVAYDVSPGGVRTFEVYDKGDNYDIMDIPIYETESLTKAVEYCYNLDKDFIVRTYAEWEMREMLDNL
Ga0209229_1000203917	F024786	GAGG	LTTYRVFGTKYHNYYTIIDAADQFEAVDMANKLEAHNWFEIATDDVIEATDVYLNEDTSMDVQLNI
Ga0209229_1000203918	F004666	GGA	MTTKREYLATKGITVGKRGRFSSAANKALQDAAAQGVTFESEKPQPKK
Ga0209229_1000203919	F003603	AGGCGG	MQSKEHKLGELLANSVEDHFFNPAALGRYLAEQPVYTVDRVIEVVAWIIEKQAERYRREVANNGTISEGLIIANMLDKVIDKIKISNDLKHVQLPITPKERGEFIKDLPEIQEQNYRYSWLHETNNGSNANINVTPTL
Ga0209229_1000203922	F026195	GGA	MSKATRKGRERMMGFLDNLEEWLDFEEEIDKDPEIGYSTGKWSDDDDIHPTITPFISPIR
Ga0209229_100020397	F000450	GGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWGSETGWGLHVNEIGDNEHKVAIIDFEQQTFSLHEEAPRNDKDNKVSGMSNQAIFTMDLSNFVEKYADVVISV
Ga0209229_100020399	F002387	GAGG	MSDPHGIIGHYRKGGGIMASFLEDVNQMVIDAVYQDIAEQLLDDWINNNLDEGQYYADKQFAEMSGDKFIYYEFNKFYNLKEGDEDYLC