Scaffold Ga0209229_10001349

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10001349
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10124
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012767	Metagenome	277	Y
F017816	Metagenome	238	Y
F098633	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000134910	F012767	N/A	MPRGVTATISIVAFRADWATHMPISALCERWTISKDQVLRLRDVWRLPLRNDRRLRFKPERQRDPTPREIAQACRALQAQWDEATREARRVVKSQPVQMRRVEMTDEARQAFETFGDE
Ga0209229_1000134915	F017816	GAG	VAPWLIALTGVIYLVVSADLALHGKAGLGLAYLGYAFANVGLYLAARGS
Ga0209229_100013495	F098633	GGA	MTLADLQEQCWAALPPIRKRMVGRDTVNDFVTLAVENWAGEYLGACQDNDQRQVYVHALLNHIKRGHQLATGREPAEYGFIWAFLLQAVAAAVIQWLVTWWLDRRANRALMTVWQHELTK