NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10001082

Scaffold Ga0209229_10001082


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10001082 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11211
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002421Metagenome / Metatranscriptome560N
F003964Metagenome459Y
F006139Metagenome / Metatranscriptome380Y
F009743Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000108211F006139N/AMDTQVLVALVGGGFAVVVALISKIGSDNKKDHGQVHQTLGRIEEKIDNHVENHR
Ga0209229_1000108218F002421GGCGGMKTCTICKETIAYPDIQGKTHFVCDGRVPARKQAPFIQGMLASQSSADARWTKPEQNQVDAAILHVARTKGFFTSDDIWKHLGDDFPVTKGIAGRLNAAARRGHIRNTGELAYAQRGGQHDHAQRLSVWAGI
Ga0209229_100010825F009743AGGAGMKIKLQLKRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSTQPLYSDYCCWMHTILKLKGEQIGDNWREWISKNPELEIIPVLDETDPNPTDAAPTAAN
Ga0209229_100010826F003964AGAAGGMAEVSARVEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPSSVPLSGMSRNWKTGSGFQMLPWIPGMKQKIAAKINTRAIKEYNGNTTNVGTFGIQWKGATGTMFDTSMAGSLGRALTARYGSRSRVMWKAYEQRQNDVMSEMEQLVKRVMDEANRETA
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