Scaffold Ga0209229_10001046

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10001046
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11364
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007222	Metagenome / Metatranscriptome	355	Y
F014089	Metagenome / Metatranscriptome	266	Y
F037494	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000104616	F014089	N/A	MEATGLKMSSYIELLNPQTMIGKLLQDGEVIAEYKLEQCDGCTKIVKLDAFGYTKGQAGEKLVWLCGVCR
Ga0209229_1000104617	F037494	N/A	MKVKPTIEDKVLAHTVALERIAQIYGQPDHSSRYDRSLGFHDYVAQVAESIVAEILVARYLGYVDFNPRDSRFKETADVGSNIEVRWTRYENGQLIVYENDRVTDVAILVVGTSPNYRLAGWIPVAMAKRPRYKHAKQPTWWVTQQNLQPIENLKGSNYGQAAL
Ga0209229_100010466	F007222	GGAG	MANKKGVFAIEVEPLALRNLIQTLNLLDKDSQNAVRDAALPLSKRLAGQLLQFSQSAPAPQTKLVAQTIVAKRDRLIRVDIGGPKKVGRKYGGEASKSGKGNKVRQGAAPAGALLWGTEYGSSRGTDSLGRAYTDRFKAPQNKKGYWINPAVDYYTPIVAKEYIDIVQAIIKSKGLE