Scaffold Ga0209229_10001035

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10001035
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11392
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032259	Metagenome / Metatranscriptome	180	Y
F036666	Metagenome / Metatranscriptome	169	N
F072266	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100010351	F032259	N/A	KVVLVPSGDPIMLAEPTRASVYAFDRDGKLVGPSTVKIPAGWYALPKAK
Ga0209229_100010355	F072266	N/A	MIQTPKQEFQRDKQRLQSVERMLETPELQAALLAAFNNFCWNLPPSENPQHGWNANCKRAGARAFLEELNGLVDFREPKKAPTQNLE
Ga0209229_100010357	F036666	N/A	MYNQGFQAVVRAAARLRQTAQGARILAEWLGDGGTPVDRRQAQDRIDTCNRCIHNKPTDARSITKTVAEAILEQEQARNDLAMFLQGEGLAGTCDVCGCYLKLKVWVPLSYLGKTEMPDNCWISQERKAI