Scaffold Ga0209229_10000975

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10000975
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11793
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F071250	Metagenome	122	N
F082704	Metagenome	113	N
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000097513	F012871	AGG	MYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAQSIEEKAELIKENEMAVNDDSWRRMLDEDVQSFKQGKMTTLELRGVSMMRWLEESKRITLETFTEEEYQRCKAKARATVFNEQKLNKPMVDRMSDRKRMLVKESIQFEGLRELYKLYLSKQ
Ga0209229_1000097516	F091602	N/A	MKSDLRFCPNCDKELLAERVDFVLQDQQLEDWDSAYELIDDEGEIVTCPDCDEWDYADDDAKGEGWE
Ga0209229_1000097519	F071250	N/A	MKKLVSLEKRVEKLLKKYKTLRNNNKALCVKVWEQQFDERKDITSNFFAMYESGKYVSADNITRIARLVKERNPELRGTNHEENKKKAQLIKPLLKR
Ga0209229_1000097527	F023350	N/A	LTLENYIEGHYKKFKELAYNIARKEPFYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKDYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYILEDFTYRALSKETGIPMPFLYRTIDSIKQKIRANVIRKTQ
Ga0209229_100009757	F021113	AGG	MRKNILAIVLLLVGTTAIWTVVCYYWFGCTHKKNVQENVQKQDSIINYNAGEYQMLLEETLELKEQLAYYESAQSKAKTTYQRTRDIVIVRDTINLVDVITLVNSCDSVIAADSLVINNLKEQLNNEERKINNLQETVGAYEQKTDVLNEEINNLTSENKKLDKQKKRRNRALVVTSSVAIISTFVLSILL
Ga0209229_100009758	F082704	N/A	MAQSKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIQFSMKFYVPEVKVKLTEQTSK