Scaffold Ga0209229_10000891

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10000891
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12379
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007742	Metagenome	345	Y
F033355	Metagenome	177	Y
F079811	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000089110	F079811	AGGAG	MDGVPAKYFAFPPYRAESLGGDKGWWGVMNRNGLNVLTFPDKPGAVVTSEENAKRIADEWNNAK
Ga0209229_1000089117	F033355	GGAG	MQAVIIGKTTYKTNRADIFAHHAKCTGKHKPMKSKGTVKRFYPVYIDGMSTADYVAAYETLNKGLIAWDWQPLSTAPTLASGEDSAWEVEDAAPDL
Ga0209229_1000089118	F007742	N/A	MLWVLHHMNYFTTKGAAQALADALAMEDTDAWLYEVHASPRGFYVAVFDFDHFFLGNL