Scaffold Ga0209229_10000686

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10000686
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13840
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (10.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004093	Metagenome	453	Y
F029719	Metagenome / Metatranscriptome	187	Y
F032654	Metagenome / Metatranscriptome	179	Y
F085584	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000068611	F085584	N/A	MGKLILSLEDENVSLYSKQYLSIIELSDEIEARLEEINGMDKRKRKELKQAKQDVNFLIDMYNAKSKFKTYNRVK
Ga0209229_1000068614	F032654	N/A	MKNQFFYTRKELKSGTPENPVYNEFRDSFNINKVIRTVAIEDGRVLVLLDDLHERSQEVPDVDIRTNKVKGVKRQRNTFQSEIYLEGEDVNRFYNATSI
Ga0209229_1000068619	F029719	AGAAG	MPTIKKYLTVAPRMRNTLPQNVTRGNGVRNPQKAKAYVGKGVLKNGDTVTSIKGSISPVPNGPLIKRKGIVRGVSVKGSTLKGGGKVKVMAGGEKHVVYKAAKNYTKGTKGDIMVNHPTKDKGKWDTINLTRKGKAKTVKQGVAATKKWHRDNPNYKYKGKKK
Ga0209229_100006862	F004093	N/A	MIVQTVHEILNPFDVEVRELGYGVALFLITGSIHSNPQFIVRFYHTGEIRTVDQNDLRVYGNPTAGESLKPKDND