Scaffold Ga0209229_10000661

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10000661
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14016
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F028149	Metagenome / Metatranscriptome	192	N
F076012	Metagenome	118	Y
F090287	Metagenome / Metatranscriptome	108	Y
F097235	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000066110	F028149	AGGAG	MATGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGLIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGVWENPTGASCVGQPCDPSENKIGWGFTRSTYSLEKQAWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYSPTGISGGAFACKAGLPAISFSWVGAGYTTLRVLDSASAPVTAASLGLLTPDILRSRVTRQYFLGAIQAGKEGYDSLQLHTDKETFRYLAKSNSQLTDAWRFGEFAPAAKEFYKFGFMGFVGDFMVKVLQFPLRFNATSTGGNYTLVLPYKNVAASEGLRSEFNGDYDKAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGRPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVNGACPVIISGCAEDPGDPAQNYNSANGVCNPTLQFTAVANDAGNFVIGTTGILCDGNIVTNAGISEASVAALVVALQAVWDAEFGATSGTWSVVSGNVIQLASSAFPTATEVVPCTNVTLEFAI
Ga0209229_1000066111	F097235	AGGA	MYGKMMRKRKMDAMNRMGAEVETVEFMPPEGMKLEGESGSAMVDWRMTPNGTIEIVAFDGVTLGEKGSVDMAEDAAENEMDDMEEEA
Ga0209229_1000066112	F090287	AGGAGG	MPALTPQELATLGGCFDCMEPGLQQTMIITLLQQIQAASPGAPLTTTSTGGLRTATATSAVNPARKKFTLQNQKNEELFVKFGTGATTTDYHIALPAHNTGNKHSDPLMLDGYIGAISVAANAGSPSYTFAEFV
Ga0209229_1000066119	F002621	N/A	MHPNLSSLIWLLALPICLGCRTKVVLVPSGDPIMLAEPTRASVYAFDRDGKLVGPSTVKIPAGWYALPKAK
Ga0209229_100006612	F076012	N/A	MPTLEKATPDLSPKSLSRREHRTGTVLAVARATLPAQMVLRLRRVAGDLGDIAENPAAPAEERISAAKAMVTVQDQLIDLLGIPRRPAASGGKRPSAPMLDVSPGPIPPDL