Scaffold Ga0209229_10000586

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10000586
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14943
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F034813	Metagenome	173	Y
F038106	Metagenome	166	Y
F046912	Metagenome	150	Y
F083691	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000058630	F083691	GGA	MMGISAYKEITEWNEPEFVVPNHTYLFDGKSNILAYARESDGQVTVFNKPMPMDTRRRKFIKVKHKELDAIGATVVVQQPEALNVPNWQVKSDSGKTYTVTLESGKYQCNCVGYSYRGKCKHSEQIKNENSN
Ga0209229_1000058632	F046912	AGAAG	MLVKMMMNKGNYQIDWNKLAKYNIVVNTQPKDPLQDVVKNDELVSWMQEYPDAMDAINKIKAKK
Ga0209229_1000058633	F034813	GAGG	MSYDSDVENVYMVEFESGRIIHLSFYEVQDVKEFCADEFPNETIKVIYQEVYVGENDDE
Ga0209229_1000058637	F038106	GGAG	MKLGYKEKEDIMQAMFHLHKSPIGFRSVYKGVPIYNYEQIKQFIDFTKYFVMFRGPRPRFNQSSTRKRDAKAFDVYERDTRTVREIRIEREAFERGVRWANNRSH
Ga0209229_1000058639	F006060	AGG	MLKFEGIAKVGDVIRAYDFKPCAGRDDAFIEGVVEQANCNESGFNSYKVTVTVDKFKKYETKPNPRNRVGQIVFVPHQTSFMEFDFRVINLSRG