Scaffold Ga0209229_10000548

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10000548
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15310
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016267	Metagenome	248	Y
F018532	Metagenome / Metatranscriptome	234	N
F074556	Metagenome	119	Y
F100701	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000054816	F018532	AGGAG	MDQTLELLLSRIDDQRKTVLNNLGDGAAKDFASYQNMAGYIRGLSVAESLIKDLAQRMETFEDE
Ga0209229_1000054820	F074556	N/A	VTQQPMQTQNNEENQQLDQNSVVMYPNIDENVPIPKSARDALPDLTNEEEIEMLANTVKLLADLTGQQIQATQDDIDEAKTVIKTMIKEPQTKLQLKKYKNATLASLAGMVAELDAQVVDELKDLKTFVVNGLIREAATADKPKERITALRAIGDIDGVDAFKKHTEVVHKSMSMDDIEVRLQTLVGKLQKRLDEKEVSGEVVENGE
Ga0209229_1000054824	F100701	AGG	MKTLNMKQIGYNQASFSDSIKGIAREVYAGYPNFDEEVSDEVKAELNAGYLLRVAENQPKHKQHFVIESGNYIPVDELAFNKFEGAKYIRSVDNIMAYTPQAFGALRTSNPQLHSILKESRDAISKYCSNTLNALKKAVREIKNEGKTRERGATKSFAETVKDTMDGLKKKCANAKARVDETADEKKLVLAISEFNRKWLAK
Ga0209229_100005485	F016267	AGGTGG	MSAERELAEHGVEIKHIQSDVDTIMEDMEQLKKRLDGIEKTLEEIKGGWKVFIGIATVGSMIISWFVNHWLK