Scaffold Ga0209229_10000290

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10000290
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20127
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (37.14%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001780	Metagenome / Metatranscriptome	635	Y
F001923	Metagenome / Metatranscriptome	617	Y
F002413	Metagenome / Metatranscriptome	561	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F004790	Metagenome / Metatranscriptome	423	Y
F014261	Metagenome	264	Y
F028807	Metagenome / Metatranscriptome	190	Y
F039626	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000029010	F002413	N/A	MTEAPTPMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAANHYMDYLGLEGDFFREDFKVDNRDFLVNAGKFARRLDKDVFARHFANWCPVMKHHDQPSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGVGPANDEELDSIAEIRAAHLFDQEYIFKPDARNQIMSEGRILAKSWRL
Ga0209229_1000029023	F000957	GGAGG	MSAFKHLDGMVALLSEIYEINERVMCGDICSAKTAIASTKMKKLLNHYHEALHEDGASKVSLQAYVAAGGWVGITYSYEVDGFEVAGSQVPRRV
Ga0209229_1000029026	F003714	N/A	MPNANHPYTDHLTFAGRPIPLKRPMAVYAAVRLQAILPQIAALNAAGKTQADAAAALGTTVCSLRKWIEITGTTWTNLKVRGPYKTRA
Ga0209229_1000029027	F014261	N/A	MKSLIALSFLIIFGWLAVVTFCGPELYRAINGPEPVKAKAIRRSR
Ga0209229_1000029028	F003583	N/A	MGKAKPTSQQPSGGSNLVLAVCLLTAFAGLSAFASAYIAGVVLDLLQSRDALVMIVTDAGIKSDSVSVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFIRSRRQNAS
Ga0209229_1000029029	F001923	N/A	VSAAPFNPEDIPKEVKDGLVASILGGLAMTARLLLSTEPVSLGWVVRRVCAAAITAALVGYAIQEHIQSPGLRMGVVGAAGYAAPECLDYLLKYVKARGEKEVAAVAGKPSKPHGKGKANKPAAKRGK
Ga0209229_100002903	F039626	GAG	MKPCDSKTRQLAELARFEKAKRDAVIVETYLRCRTIHATRQALDFTHSREVVRRAISKAGVYDKSNRDQVLIAKFKPSPKKSKWDDRTYSKSHGSELHMQTEAEQMLKDACVAYPRHIQREVQVPGCQMRADLVGFNWAIETKKECSSQGMLTAMAQCLVYRKHLNKRHVCIMLPDDLEPASFYVSECLSYGIPVIKMSQLIWWVNTVQNDAQPN
Ga0209229_1000029033	F028807	AGG	MNYTYKVSMSGVHLADPYAFLKAVFPQWNGEPAQSNGAYVQVTFDTPQTPADLGPLVKVELISNL
Ga0209229_100002904	F001780	N/A	VTKASINDLSAPARDAKSFDAWFFAQPKKVQEKMRENGVLPYREMSQSRHVFQVDANHPAWSTKDGDNLRKETEAFISRDHVGVMLKGFIDALAATDNFAFRRHVETVRWALSLPGCLDSRTIGKMYGRSHFWMRSRAKEIQRAVNSDAVGMFPHVNARRDKHKQARPRPAPHNP
Ga0209229_100002909	F004790	N/A	METLTPETIKWGMRIGIAPDRMAFLASCPKFTVCHGNRKSERNVKDNPNHHLQRLGSCWWFRLRRRGKDIVENIGGDLTTARKRRDEMLAAFDAGKPIPYLANK