Scaffold Ga0209229_10000145

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10000145
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26756
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (37.21%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F014837	Metagenome / Metatranscriptome	259	Y
F016141	Metagenome / Metatranscriptome	249	Y
F023295	Metagenome / Metatranscriptome	210	Y
F024095	Metagenome / Metatranscriptome	207	Y
F030057	Metagenome / Metatranscriptome	186	Y
F035672	Metagenome / Metatranscriptome	171	Y
F043831	Metagenome / Metatranscriptome	155	Y
F048257	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000014518	F014726	N/A	MGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPVAGATELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLLNNDVDGFTRANQATLDTRAIASDYLGGFVQAGVLNFSVGARPFATIVKPFQYAPPPGSPLDLESTYVNQISAAPVPAAGAAQVVGVPWVTQTKMRNNVYFVDPNILIEAEQQFNVKLSFPSGIVPVLATNVVNNDTNPLKVGVILDGLLLRPV
Ga0209229_1000014519	F016141	AGGA	MSPEILDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFTTGTNFTYRGYTALQDSAMEKLQSVMNLGVLEISFAQKLYYQIARPFVQCPAGFGIDVQSLASSRTGNAAETQPEGTNWLARSDYRATSVYNIDPIQIIEPEIQIQAALNFPNGNTPNFTNTALDTANGPQTPSIELGLIFDGYVIRPSQ
Ga0209229_1000014520	F024095	GGCGG	MDNTNSLPFTYIVTSQLGAAVGATGSATLIMQADSRFELMGVMATGGNLATSEDALQYPNSFTVSIRDQTTGRDLMSAPVPQRIFAGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAAVNNITVALHGYKIIL
Ga0209229_1000014521	F014837	N/A	MIQRNINPKPRFVTLTASTPNTGAFVGVPLATLWKAAFFRFPQDSIIHYISINSTFLANGAASQVIGAIAYGQGQDNIGINLGAGLDNFTDEILWRDELLNPAAGVVTADKSTQIVMNEFFVHTGTGIGVYVNGLAGNANINATIAFNPIAEWVNFREPTSGARL
Ga0209229_1000014525	F035672	N/A	MHNLHDTIRDLGIGVGGPASGLFIANIVPDPVMANVSVTLGSLAALTVIIKNILDFWNNRNK
Ga0209229_1000014527	F023295	N/A	VKHLRQLSDRVKLLLISRRSLVLLSMLQGLGCQTRVILVPEGQPVMLAEPVKAKVYAFDANGKLTPSSNRVLLPAGWYALPRK
Ga0209229_1000014529	F048257	GGA	MIQFPSSVAARKCLKGEGCGETVYWILRRTLLINSGLRLAGEKEKLWKKSLYGSLAVQAFVTAWTAAHMDEPVASLPSGEVAVAGDVVGILGTYLTRSAIVGTGLWLSGDRKNLLRNTLISTAMIQATVLLWAKDQEI
Ga0209229_1000014542	F043831	N/A	MTSTQLAAIAYQLGAIDSIRNQLFQMTLDLNDLGEGPLSVKLELAVQAFEQRAAEHSKILNQYANETLICPTQNLQP
Ga0209229_100001457	F030057	N/A	MAVAYNLKKTLGGSLWKWQDGVEKVFTIIGPIRAGKAVSNPRSGIAKAPDVMTVKDVEDGNEKDVLVGAVLRSSLTENYPDDSYVGLTFACTQGAVKLGTRYKTMTVAEVEVDNAPSKKAKK