Scaffold Ga0209229_10000116

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10000116
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29631
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (7.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046994	Metagenome	150	N
F050308	Metagenome	145	Y
F059678	Metagenome	133	N
F061576	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000011617	F061576	AGAAG	MQTESKWVRELILSGQPDNIELGFMLNDSFNLFPLTRKFYRKNKRFKFWLPSRHFSVLESENRYYSWVAMLNNELKTHRCYFWLDFKEPKFKTPWQAWQKHITSGVKWPYEHTLFHYPSHPYTSMFMP
Ga0209229_1000011619	F059678	N/A	MKTLLFLFLFGATAYTQTDTMYCIQILSTRHPEYIRAEHLAMCTLDNALVEQTDSLYRIMFAYDTLEEAEIMLTTWKRAHKDAFITVRTREQYYNLKLFYTHD
Ga0209229_1000011623	F046994	N/A	MIFRKRNRAEQNEKNYQKWLKTYIPETTKQRIELVRVFTDRADNNFYILKNPANLTRERAQRIEEAMTAIDFGINKTEVVEKLNGMLQIVEDMPWQNMTRDKLKEFHTKSKDQLNDILYRLKSVKIDDLLLEAGLYFFYIDGENPYIINSETQQRKMDAIKKDDELRAFFLNSIEQILKGSSASNV
Ga0209229_1000011628	F050308	N/A	MFLTLCSLAASCQITKVDNGFLISRDYAEYIAARFDSLDAYKIAYGECVNRTVECDALLNKSERLIADLNEQKNNYSDMLLLKDAMIKSYERDIIIFKDIEKKLKKETHLKKMWKITTYAFISVSLGALTYSILK