NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10000085

Scaffold Ga0209229_10000085


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10000085 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33567
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002689Metagenome / Metatranscriptome536Y
F018705Metagenome / Metatranscriptome233Y
F019800Metagenome / Metatranscriptome227Y
F032265Metagenome180Y
F040085Metagenome162Y
F046898Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000008515F002689GAGGMATVDATDARLSTHEEVCALRYEQINARLKRIETILMKTVGVMLVSMAGTIFAAIWITK
Ga0209229_1000008522F040085AGGAGMNLPDKPAIRHAYEQAVVALLNATNATEEEAEVFVDAMADLIFTTMQTYLSEKESNAVDH
Ga0209229_1000008524F046898AGGAGMLAPNLAAGRDMRERQLDIFEQRDHQFLERCRALAVLICKQQGQVSINDIRVIIDVPPGVHPSVLGAVFRTKQFVRVGYTEAAHPQAHARVVRVYSLATNKE
Ga0209229_1000008529F018705GAGMDTPTPKLKPFLMRLHPHTRQLLDKAAADQHRSVSSIIDQCVRDQLQPRYGELQPRLQRFLSGVKQ
Ga0209229_100000853F019800GGAMSWEEIEAIGQATDIREVEQKREDLAKLTLRVFGSEDGQKLLHWLRDMYVNVPIAVPGTDPSHAYFAEGQRTVVRDIEVRINTARKL
Ga0209229_1000008546F032265GAGGMATLPQFKQRQIARRSTSDIDRLAKQYKANIDALTGEYQTAFTGYQAGVAEKMKPFEAQMATYKESLLPTYEAQKAAYQQKLEDYNKLLADIEANPVTEEIGVREYKVPRWGLFGLAGYETKREQFTYYAPKEIPKFTETAPALPEAPTAPTIEEFDSSQFGAKKAEAESVFKREVGERRAAKIGAVSRKVTRPLLSGEQG
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