Scaffold Ga0209229

Basic Information
Taxon OID	3300027805 Open in IMG/M
Scaffold ID	Ga0209229_10000006 Open in IMG/M
Source Dataset Name	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027805 Open in IMG/M

Scaffold ID

Ga0209229_10000006 Open in IMG/M

Source Dataset Name

Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	78609
Total Scaffold Genes	98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (12.24%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

78609

Total Scaffold Genes

98 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (12.24%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Sandusky Bay, Ohio, USA
Coordinates	Lat. (^o)	41.474889	Long. (^o)	-82.854137	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Sandusky Bay, Ohio, USA

Coordinates

Lat. (^o)

41.474889

Long. (^o)

-82.854137

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015210	Metagenome / Metatranscriptome	256	Y
F029447	Metagenome / Metatranscriptome	188	Y
F029448	Metagenome / Metatranscriptome	188	Y
F059988	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000000657	F015210	N/A	MMLYESFRNNKHITVFDVDDTLVVTQSKIKVSNPQTGFYKELTPQDFNEFERRENDEMDFSDFKDLDILKAGRIIEWVFDILKRTISKGDPVGIITARDDSKLIYDFLYHHGVRIDPAYIFAINDPKSEFSGSIAERKKQAFVKLIEQGFRNFTFFDDDKENIKIAKSLTKEFPDIKMDATLIKKKWIPKFNDWS
Ga0209229_1000000668	F029447	N/A	MNVKSLTLKNKLVDEKTGEFYFDLTAPSFVYEADLGVKALHYVMPDQIGRIDKISEIYFGSSEYIDAICVINNIFNPFIIQEGDVLVIPDLSRPDLVYQRPNPASRPTPTQEPYVDTGRQSQKDQSRVQRLIQKAKEKPAGVKTPLPPNMLQPGQDVKVYEGGNIKLGANLPSRSTFINANDSSNR
Ga0209229_1000000679	F059988	N/A	MNYLTEKRKGYPSLYKATYESDWELKNLGYDYGSNLMSKMLSSYMFRNERLRQFIDEHLSPIMVYFINKVKYLRIYYNFAVPKDYEKIN
Ga0209229_1000000681	F029448	N/A	MAISVTEILGTDSLSGSRLVINDNFNILASEINAMEVYFNPTAGTITNLNDLKTEALRVGLSTVLLDINANNFNILTRVNLSGNLNLNGGGLFRNDIDPQTLNDTYAGPSMTIAVGTSTAIPPYTVERVGNTSTSVLNIELNDGSIGQEIFFVYSDATTGVVEIAGAIDPIILDGGTAIQLNAKGQSVHLLCVDDGTGNGDWYITGGSGYTIV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209229_10000006

Overview

Ecosystem & Geography

Associated Families

Sequences