Scaffold Ga0209229_10000004

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10000004
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91329
• Total Scaffold Genes: 146
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 115 (78.77%)
• Novel Protein Genes: 37
• Novel Protein Genes with Ribosome Binding Sites (RBS): 26 (70.27%)
• Associated Families: 37

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001280	Metagenome / Metatranscriptome	732	Y
F001464	Metagenome / Metatranscriptome	689	Y
F001900	Metagenome / Metatranscriptome	620	Y
F002489	Metagenome / Metatranscriptome	554	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003582	Metagenome / Metatranscriptome	478	Y
F003663	Metagenome / Metatranscriptome	474	Y
F004006	Metagenome / Metatranscriptome	457	Y
F005000	Metagenome / Metatranscriptome	415	Y
F005053	Metagenome / Metatranscriptome	413	Y
F005054	Metagenome / Metatranscriptome	413	Y
F005479	Metagenome / Metatranscriptome	399	Y
F007363	Metagenome / Metatranscriptome	352	Y
F008357	Metagenome / Metatranscriptome	334	Y
F010248	Metagenome / Metatranscriptome	306	Y
F011938	Metagenome / Metatranscriptome	285	Y
F013878	Metagenome / Metatranscriptome	267	Y
F017101	Metagenome / Metatranscriptome	242	Y
F017134	Metagenome / Metatranscriptome	242	Y
F021111	Metagenome / Metatranscriptome	220	Y
F021757	Metagenome	217	Y
F025747	Metagenome / Metatranscriptome	200	Y
F033808	Metagenome / Metatranscriptome	176	Y
F035764	Metagenome / Metatranscriptome	171	Y
F039131	Metagenome / Metatranscriptome	164	Y
F044483	Metagenome / Metatranscriptome	154	Y
F061853	Metagenome / Metatranscriptome	131	Y
F071173	Metagenome	122	N
F074868	Metagenome / Metatranscriptome	119	Y
F103145	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_10000004101	F000369	GAG	MSEIELADHFDRMNIVVSELLKGNNPTQIATLTGFKRAEVVELIDEWKSVVHNDTAARDRAKEAISGADQHYAMLIKEAWKTVEDADQAGQLSVKSGALKLIADIEGKRIGMLQEVGLLDNAELADQIAETERKQDILVKILKEVTASCSKCKMDVAKRLSQITGIVEPVVLSEEEANVL
Ga0209229_10000004104	F000376	GGA	MSIYQEKAKECKCCGKHVPLPTVLKEYNGVSVCPTTFANVIEYKRMWKSLGKRPSGSIRKHFSDYVQQLVEETIDKNEDGTLQ
Ga0209229_1000000411	F017134	GGAG	MNTFIVACLNHEICGATETFYSEEEYEIYGDDYMCGECYDSEEMEFYELTGWADSDALASAGFGMDEDY
Ga0209229_10000004117	F003582	GGA	MNTYKIKLEVDAEVEAFSSDDAVDYANDIFGVDDEVKNVKVVSVKEK
Ga0209229_10000004119	F013878	AGGA	MLNLTELGVEVFIKKAKNITPYWDNYDLIIWKKDNSGFTNIKGMFRENAWGTAERIAVNDNGIWKLPAKYVRNFK
Ga0209229_10000004121	F000473	AGG	MFIDKSNDKLKEHFKYGINQWTGEPNKPVFYTEEMKKAVHQVKKPSMLLMDIVMYPDFLALRLYEDNFLQFEGTKKEMVIDYVTKVKRLIESYGVRCELEGKPSERVL
Ga0209229_10000004122	F011938	GGAGG	VREYYDTTHIVFIHSEQCYGTVEKLGAWASIVKYDNDGIEYNELMENEEFTIVDEIVFKHVEESN
Ga0209229_10000004123	F000671	GAGG	MEKILCYSCNKSKNKLDVKRSSLLPINLLVCESCSSAKLEPRWVVILAGRSNGPDHVRDFIVKRKYLGNEITASELLI
Ga0209229_10000004127	F010248	GAG	VRKSDRIRLLEMEMLRMQFQIEYLNTAVRLLLDEAKVTGPEMDAGKWYNAKLNKDK
Ga0209229_10000004129	F017101	AGGAG	MESNEKRMSILESIIQDVARALFQKWANGLPEENRSEEALANLNKNAIDSTYFVVKMFMDQFNAAADELKAQPDEQ
Ga0209229_10000004134	F039131	N/A	MAQDEVYELEGYFERKYKKQIMDQINNFEFPNEWTPKQVVDYITYKIDRK
Ga0209229_10000004137	F001280	AGGAG	MCIECGCESVGSESGIETILGGMLNVSTDGEAGLTLNMTATPEQRERFISGE
Ga0209229_10000004138	F001176	N/A	MTTPPNNQPSGAVTSQEAGRKNPSQGKFKSGFSGPRPATKIDTNKHGIRRETVLGQKKTKPKKV
Ga0209229_10000004141	F061853	N/A	MNKKTITLIGLLVALVAVAFAAYNSFSQLKDIDYDLFETEDEDDD
Ga0209229_10000004145	F035764	AGG	MIDWLVNRLFWWTPLRNALLAEATFYNSMTTLLNDPESMKTATAYWNEGDGWRGWTIEDNKYYFNDVPEYDMLSAWEALDEMTDGQRPL
Ga0209229_1000000417	F002598	AGAAGG	MATKLYTIESLLVGKNYRSTNRHFQGEIVSAEPRPEIWYGENTEAYLIEIRTGGLRNKFATIAVKVGE
Ga0209229_1000000420	F074868	N/A	MSDPPARILVLENKERWSQMTTLEKTNIGLALGISGALENRILHDWNNGGAKSTYGLSIWQRKALLKILISESPKCFCVNCLEVK
Ga0209229_1000000421	F007363	AGGAG	MRGYSIVDLLVDQYYKPTSLRRRFNGGIINHAEKREDVYPPEGYEAFAIRYRPTGSLRDEWATVAVRISDY
Ga0209229_1000000423	F103145	N/A	MLSEKTFNKIVFDYQHGGVKNFHPEISLSERKALLKYLFSIPTHKDCECAK
Ga0209229_1000000424	F021757	N/A	MMTRKDYVKTADILSSYKDLIGDEFTYHDLVDDFASMFAEDNSQFNADKFLEACNK
Ga0209229_1000000435	F044483	N/A	MSDRRMVKKIYADQIAYKMNRAEKNVYEDVSKATEALKWMVEKIESYLNKCLNVEDGQCNLSWKHDECKMLMDILYDLTENVKYKESVWRFDPKQEHLWD
Ga0209229_1000000436	F002489	AGGA	MTENNEQPQNLEDNLPMVNYIMLHRIYDLLTLIANKLVGPEDVSKMVEYHNQGYLLGPAPSFTPGYEDNDGSK
Ga0209229_1000000437	F021111	GGA	MENSKDRLNHIETDGGTIKETDAMGREKFWEDLGRPND
Ga0209229_1000000442	F008357	AGGAG	MAGQRNFEVDQNTTFTFTVEYKDNDGDPIVLTNCSAKMQVRDTKGGSKLAFSLTSPSGGIIIDEPNGKLTIKMTPTQTNKLFYPKSSYDIMLTDSNLNKTKLLEGFISLSRSVTL
Ga0209229_1000000458	F005054	N/A	MAEILINSQSPITHNVFWNGDIVEPSSLPVVKLFDVTTDPAISPAINPTQILAVLNSIADENNPGSYIVYIPYSYTSRNRTLRLQWEYQVNGTNVARADEVFVVTPYVDFNHVQDLGFSTDSSDPNYKSYKELIKAEKYARKQIEQHTGQKFYLYDDVAVAYGHGSDILPLSSKIYQIHELYAQDILLLDNINEINNWNYPVEISESGYGIKINRAGLLDNTVYTANGMVPPSINDSSGVFQSGVTYKIQGRFGWEKVPDNVELAAIELMKDYFSKDTMWRNKYVKTISTFDWDFEYTGDAYTGTGNAYADSLLADYVLTTKVEII
Ga0209229_1000000459	F001229	GAG	MNSIVDSVLSMNLDVYRQYEIQDPDTGAIVREWNYYKTIPCHAKGVISNSATTRSSDKQIFSNKYLNDQIIQVRTAEKLTAREKVTNIRDVEGNTIWNEINYPNETPTVFEVMGTTPITDPFGRVIAYNSSMKRSENQQIGQ
Ga0209229_1000000460	F001900	GGA	MMYANQNGPLKDSTVSQISAFVYYEAAVISKLTTNAQFKAAFTKIMFDQIESDFGNYIDALARSKPKSLHHVYEWKKAGNKSARLFKLNKVSEDGLSFKINYTLLPSKSLVPSNNSKRRHVFANKAAVMEEGKPLVIRPKNSERLVFEYEGETVFMPKGKSVTVKRPGGSGSTNQFNLAHSRFFSGRLVNESIKKSGFQRIFNSSMTKALRVPSDIKTVKYSFSANTIRSQADAALAASFGGVM
Ga0209229_1000000461	F000258	N/A	MLELRKYLWKELYTRNIFDEDDYWSDNLNENIIPIIPVQQAAEMNQFLSGKKHMVYDKIGMSYEDNWLICCEQVMFTVYSTSVADINEIRNYMTDEFRRMDESARDINKWVDLSDKFKFHTLWVADISPTAPSEELQGFFSSEIILEIKYSRITDSQGRFL
Ga0209229_1000000464	F005479	AGAAG	MPELINTLQALKKKDHEDKKFFASLKGVEIGEYEDDKKGGPSFEDIQLRAAGIGATSNDVVSLQGNFAAQAGFGIGAGLGYSRE
Ga0209229_1000000466	F005053	N/A	MYLPRGSVLNVEAKDLLATPQGAVKVWNKITEHNRSDISISIERIERSVRTSNGTLRKNHIADKRRFSMSWTMLPSYRNLTVDGGWGAEDLRSFYLSDDGKKEFNIRINLAKSGTDTSSSGALYTPTMANTSSELYTVVFGGCNFSVVKRGLQPHWNVSIELEEV
Ga0209229_1000000469	F071173	GGAG	MITKFGKRFLTSYLAGSESFLNKELAFGIGSTAPNLKGNDTRLEFEFYRIPVELSSFNILQSGVDIDGDPVFNYFVTYKSTIPQDISGVISEIGLYPGGRQSFNNFDSKFITSFTNEFNWFDGSVNPTSQANTQDSNGAYTFLSKVSDSMIRVDVASGQTKEYINTLISDDISGYSINDTISIAYKKADNNVSKIRVKFYSSDLAYYYVDFTPQSGTGDKIQTLSLSNLFSNYTASPNLPDPSSIIKIGVATTATGGATTVYFDAIRINDEDTFDPGYGLISRSILSTPLIKKPGRPVDIEYKLQLDF
Ga0209229_100000047	F003663	AGGTGG	MLSTAVEILEATKNSIFDEDIMGMAGELHTRRNELPDEVYAKYLFMYSAALSSKVADLVTKILLTEQEMSDLIATIDEMDNLSETILEEDNNGE
Ga0209229_1000000478	F001464	N/A	MARENRQRLRKKFVYFFLNGKVHKVLKLSRAKDEVIAWCYPDKKRLMYSYSQVDKGMERAYSVVEASKILGRHRVTIEEYILQGKIKQPQKVYPISNPDSTWSKYMLSESDILDIHQFIIDAGHIRDLPSRSELQAILKHNLILYTKTEDGKFVPVWKAE
Ga0209229_1000000482	F005000	GAG	MRIRLLMTHRKIKRFQIDVEFQDNAQLISLRPQYENLLVQDMRGKGYVRVLDIDPAFSVEFTGETWKFLMSIHGVYVGKKKAWQLEGITQGKSIPRTTRQRTSSRS
Ga0209229_1000000486	F004006	AGGAG	VTENVEGPIQSVSINQILVAILEEHGKITVPTLKFLDAAQTDKELVIDYDETVPSFTFSLRDKIEQQ
Ga0209229_1000000489	F025747	AGGAG	VPNLNEFFHKEEIKAVELERLGGKKPCNKCDKDAEEYFWDATTLTMSWTCPDGHDNSYRI
Ga0209229_1000000492	F033808	AGG	MEIFLLGMMIGFAVGYPMGLFVDKLDKKEKAKNGGR