Scaffold Ga0209358_10166201

Overview

Basic Information

• Taxon OID: 3300027804
• Scaffold ID: Ga0209358_10166201
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1168
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis → Sphingopyxis flava (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F024743	Metagenome / Metatranscriptome	204	N
F075864	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209358_101662012	F004723	AGTAG	MNKGDKFIHTDIVGRKHEVTYTGTRRIVKDCEFEFFVDDKGDSCFFTDTEVKKMERIEE
Ga0209358_101662013	F024743	AGGA	MNEVALSNLYSHASGAYNEAKNAQDLIIMMNVLHLRLEHNMAYHKIAKRCGIKVNKVKLILFNYQNEK
Ga0209358_101662015	F075864	N/A	MTPDNLWREIPQEVKDAALLLGNYFKKQGIDDWALYDVCSRKSLDNLENQVKNLETRKAIKRINRLNGFID