Scaffold Ga0209358_10079841

Overview

Basic Information

• Taxon OID: 3300027804
• Scaffold ID: Ga0209358_10079841
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1858
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209358_100798412	F071222	N/A	MDKEQIMKIILAEEASLYDQAVELRDAFGNEDPATKRAYSQWVVIINLIDKINEKTN
Ga0209358_100798414	F004234	N/A	MNFIDLYKNGNQYISNWTTDYDSDVYIAGTIEPFTYNATETDDEYMSLFILNDANLNLLKSKL
Ga0209358_100798415	F003327	N/A	MTEFTQLAIEVQDAIANGDYTHQKYLRFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNNDNED