Scaffold Ga0209358_10041437

Overview

Basic Information

• Taxon OID: 3300027804
• Scaffold ID: Ga0209358_10041437
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2771
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008496	Metagenome / Metatranscriptome	332	Y
F016662	Metagenome / Metatranscriptome	245	Y
F043404	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209358_100414371	F008496	N/A	TYKENNVEYTTSEPTFGIPATITPMTEQVAVTPAYDPKATILVRKGYYYGTPSDSKFELENADDISRAFWRVDALQSTNNSNSRAQDKLKDYLVENFDEIGEEHATEIANIFGIDLSKTVDVEFNVTIKATISIPMNTEVSDLSVYDFDVEISSSEYEIEEFDADIDSIDERY
Ga0209358_100414374	F043404	AGGA	MIDTDNPLLQTLADDFVELHNVGGIELEQWETAYNFVKHFYHTEEMVQIIIRSKK
Ga0209358_100414375	F016662	AGGAG	MTYLVATTEVIYDEQDLIKMMLATGEYGIHGHPISHEAMIEFVKDNEWQIEHHLFLDKFDVPCQISIKDEDGTDLFFAKNKLEIK