Scaffold Ga0209358

Basic Information
Taxon OID	3300027804 Open in IMG/M
Scaffold ID	Ga0209358_10034768 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027804 Open in IMG/M

Scaffold ID

Ga0209358_10034768 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3078
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3078

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F011761	Metagenome / Metatranscriptome	287	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209358_100347681	F057213	N/A	NSILNALSQASGQNFESVEAALAYVARTSSQQRGGNAQPVESELTDNSRMGRDVSDDSTDLRDQFMRLQRDLAQKDRALRMKELDTEILRNMGDRFDSDLQDYALQKIKSNLQFKRDGSYSIINQKGQERYGMDGNPLSLKGLVDEVAQGNPKLLKQNSLSSGSGLRPGQSQFAGAPPDQIPDYSKDPAAFNAWAQRNGLGKRVGLKATGVTATVSTASRKIV
Ga0209358_100347682	F011761	AGGAG	MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVEFTQVVAPNQGNQYLVPNFAPITYQDYNPAGSSGGDGFGTPPLAVEQNPALGQGSITATPAVAATAFDVFYAWTTSFELAATLGAELGESYGEKVDIRVCEAFLSFKVSPGNTNYSPTPADGFARPTQLGAMEVIGATNTSGTWTMGFTSNTILGLVRNVKQNYKTARLPGTPIIVLDSNGDAQTQSGYTGDQVGSSLNRMLAELTGGAVSQTGGSNLSNLGNELLSTGRIESVYGCMVVFTTFLSSAVRTVVGQTSLPVLVGGYFHETAIFTVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGVADPRRGGAINILQE
Ga0209358_100347683	F002260	AGGA	MSVPYQRVSNATVQDIIFYDPAAERRASQMQVNWDDYFKVGSQEILYQLEFGWWQKYCDTVLGATYYTNLPNGALISSFNPSLLIKNDQTLIRLDTFMAVKVFYESIVSDTSNVNDVDRVNFDHALRRYQAEWEKALQLMNFYDLNQDAPNGPTTKLEENWTADVDYFNNDRRYF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209358_10034768

Overview

Ecosystem & Geography

Associated Families

Sequences