Scaffold Ga0209358_10024780

Overview

Basic Information

• Taxon OID: 3300027804
• Scaffold ID: Ga0209358_10024780
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3748
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011390	Metagenome	291	Y
F015472	Metagenome	254	Y
F039133	Metagenome	164	N
F057375	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209358_1002478010	F011390	AGGA	MEIKTTNYGVCKVKKFKYQTNGNLALSLIDETGQPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVASGLFEQTGEKVPSGYCEYPVCKLVKEVA
Ga0209358_100247806	F015472	AGGAG	MAHYYLNQGGTRWVCDSKIQVVGIHNGKRYNKMRKPMFWEQLGNFAVCYVRVADNVYRGFTEDNNGVIELRLDKCYRVR
Ga0209358_100247807	F039133	AGGA	MNTTDKVIVKFKSRVPNMLYTAHYNGLLLASGRDPIDLGEYYACKYCTEWILQDGNNFYTQRGVNK
Ga0209358_100247808	F057375	AGGAGG	MAETVYFVNASDVFEAIELGDFEQGQFLDQFTYGDSLTDLTLIKKQTFVNRLVKFIGECEDVYEKDEMMQNLKEYNFGLLDCIKHVNIDE