Scaffold Ga0209358_10006413

Overview

Basic Information

• Taxon OID: 3300027804
• Scaffold ID: Ga0209358_10006413
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8113
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010247	Metagenome / Metatranscriptome	306	Y
F019968	Metagenome / Metatranscriptome	226	Y
F020539	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209358_100064131	F020539	N/A	MARTHNEELISLRGHITGIKREVKLLSSSVYKLEKKVENLYWSILVATGSLSLALITIFLAK
Ga0209358_1000641312	F010247	AGGAG	MNVQGVIKYVYDNRLAKDGTANKFPNFKFKVGEQEIVLWSSILHPAIAKGKTVSVACGASKKNGSLFVLTKEDKSPMIQELPTAKPDTSFNVDDFESENFNEAVTAIEKDMASSTAPSKSFNKDEYMFVMALLKSGIESGKIDVTKEEIDLKIKELKFLFQMNFHN
Ga0209358_1000641321	F019968	GGA	MRNTGVICSMSYYEMKLMTAVLSRILLDNEVRGENTKKRIYTLIGKLNNMMTKQC