Scaffold Ga0209358_10006111

Overview

Basic Information

• Taxon OID: 3300027804
• Scaffold ID: Ga0209358_10006111
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8359
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003299	Metagenome / Metatranscriptome	495	N
F029102	Metagenome / Metatranscriptome	189	N
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209358_1000611110	F001808	N/A	MRYLAIILLLSSCSAQYHLNKAIKKGYSCEETGDTIRITTLDSIPVIINNDIIWEKFITTKDTIIKYNTVYVPKTRLDKKIEYRLKVKTIYKDRIVEKAQAKASQPRPRGNLSLLFVGVGIGLLLSHLFKFTKDKYLL
Ga0209358_1000611113	F029102	N/A	MKHSGVLSFLTFGFGYLSGISLVFADQLHFKFLGCLLISYFTFLLASEIESKE
Ga0209358_100061113	F003299	N/A	MCRLKIMTMKIYKVVYKTFDYWNGPVKLVTKIVEAYDADHVKQLIQKNDDIILEIKQIEK
Ga0209358_100061118	F071222	N/A	MDKEQIMKIILAEEASLYDQAVELRDAFGNEDPATKRAHSQWVVIINLIDKINEETN