Scaffold Ga0209476_10077069

Overview

Basic Information

• Taxon OID: 3300027802
• Scaffold ID: Ga0209476_10077069
• Source Dataset Name: Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_precipitate (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1689
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location

• Location Name: Austria: Klosterneuburg
• Coordinates
  • Lat. (^o): 48.3
  • Long. (^o): 16.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032247	Metagenome / Metatranscriptome	180	Y
F045749	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209476_100770691	F045749	N/A	YGRIQNEQELFDFFGGREQTADYFENLFAESEKHAGVIKGFLLNYNISDEFKASGRAPDTSSRQAMIQATISPEQCTVEDLINKNECLIINGRVLDVTWLNELCTIDGDMLPPTRTLGHILSDMGYQQIENRRVFVKKTNSQHYVWFKPSTKNNSDTAKKEVMDFFKNGLEQVPF
Ga0209476_100770692	F032247	AGGTGG	MTVDDAIFNLETYGRHMGNRFIAINHDRHDALLLQNAVIVLESAGMIERDTVEAWAQCNVRIINKPVPKVDYTTGL