Scaffold Ga0209091_10010677

Overview

Basic Information

• Taxon OID: 3300027801
• Scaffold ID: Ga0209091_10010677
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6435
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F007609	Metagenome / Metatranscriptome	348	Y
F054361	Metagenome	140	Y
F060349	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209091_1001067714	F005364	N/A	MDKLDLVNRIKGLVKEEVSSVLSERTYQYGGLLDPDEFDPIDPEIHIVGFGTMARSSLRKEIATRLEGALSTAKDASAGGPNSYDKYKSLEGVLEDKGVLMQQIKAEAEIANQLEQLRIKGGRRSIPIPKQF
Ga0209091_1001067716	F007609	GAG	MITLENISTGDVINGEELEFFVDDDTAIGEVYVDLIFQALDVLNDHQLEHALHLEYKQVEDLEGILSEFNQF
Ga0209091_100106773	F054361	N/A	MGYVNNSAQHDEKKLKKYGKHYASIDFEINDSISEHYFENNEKPVVGKLIIGNSRFDVTYQEIDHMARTLHAAKDVINRKYKMGMMK
Ga0209091_100106775	F060349	N/A	MSKHQNKVLKQYPKAYAEHGMNGVRIISNDVFLAKEFYMPNTNDEDIAWEHAAMSCRLTQNFNRAHPSRMNLSDVESKLSRMHNRKRRGRRVK