Scaffold Ga0209091_10001200

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209091_10001200

Scaffold Ga0209091_10001200

Overview

Basic Information
Taxon OID	3300027801 Open in IMG/M
Scaffold ID	Ga0209091_10001200 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	23195
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (79.59%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	77.0991	Long. (^o)	-150.2252	Alt. (m)		Depth (m)	58
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031657	Metagenome / Metatranscriptome	182	Y
F037425	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209091_1000120024	F037425	GGA	MEKNWDSVRKQYAGIIQNLINNIDICNRRFVEQGDSGYLVQREVYIKEVEEIKTFIVNKEKELGCYGDEHNED
Ga0209091_1000120032	F031657	N/A	MKKEKKIHFLYHIEDVGFKMLTELQAKKYKAKHGDVIWNVHKALDMTPDLLFEA

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