Scaffold Ga0209800_10343927

Overview

Basic Information

• Taxon OID: 3300027800
• Scaffold ID: Ga0209800_10343927
• Source Dataset Name: Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 8 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 621
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location

• Location Name: Crawford Collection of the Royal Observatory Edinburgh
• Coordinates
  • Lat. (^o): 55.9225
  • Long. (^o): -3.1724

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044438	Metagenome	154	Y
F056431	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209800_103439272	F044438	GGAGG	LANTEMQYVKNRIQKLEKDFAAFASLLIQAGIVEVKEEDGVQVYAVNKVALDGE
Ga0209800_103439273	F056431	N/A	YDPNQATLAVAAVKNRFGPHTADASDYAQLLVNYAACQIGDQAEYGWMYRKDAMAGYQGGYNVG