Scaffold Ga0209353_10030756

Overview

Basic Information

• Taxon OID: 3300027798
• Scaffold ID: Ga0209353_10030756
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2498
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050981	Metagenome / Metatranscriptome	144	N
F089884	Metagenome	108	N
F100656	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209353_100307563	F089884	N/A	MTPAEIAQLRADLNAKFASLSDSARGRWASAAAGSDYLLGQLDPVGARACVAGLPISLSIACAPQRETRAEFLAIFDAAMPPDFVTPPIITTPV
Ga0209353_100307565	F100656	AGCAG	MTTLKNSLILLALCMLCACQTPRPKPLPAVVSVAQAKASTASASVAVRSAIDSSKSTTSEIKRIRTTQDRVDAKSVLILKWLEFQR
Ga0209353_100307566	F050981	GGAG	MRWLAIIWLSASSVWAQISDDELSKISKEEIVLTVRHLRALTADAIASADRAIASEARVQASLTDATDALIHSQNQLLKVDQDIHSLQAQAQEQTRIAVGAKADALKAQRLADHRGNLLGWLGAGLLCMLCLKLTSILPPPYGFLLPVAAIPAGYWLARLLL