Scaffold Ga0209353_10028047

Overview

Basic Information

• Taxon OID: 3300027798
• Scaffold ID: Ga0209353_10028047
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2624
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F007102	Metagenome / Metatranscriptome	357	N
F018367	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209353_100280471	F000220	AGG	VSEGTLNANSTLDKVLGYVDSPFKLAAILIMGVVAFAGYFVYTNQDLLIGAYKESKKIPSIAEDRVEDASAHLFKTTNATIVAVFKVNPMFGTRVLYRAYAKDGRDKTNDGLDVGLFTSNAANNADVVKLMANEIPCGEYRTAQSEMGIWYINKGVTYTCRISVPPEPGRF
Ga0209353_100280472	F007102	GGAG	VIDPITAFAVAQGAIKGIQAAIKMGKDVQGITGDVMRFFDAKEKVAKEAIKDPKKKYSSDTSQAMSTVMQLHELNRAEEELKWHFINQGHSQLWSQILLERNAIVQRRRTQEILDAKAAKNRKAEIDEAITMALCILVAAAIIMLVAWGVIEMKGKL
Ga0209353_100280473	F018367	GGA	VIDAIASAQVQWPNTETQIVLVCRVVLPQEKYGANEFLDKDGRVCRWVLEPKK