Scaffold Ga0209353_10023707

Overview

Basic Information

• Taxon OID: 3300027798
• Scaffold ID: Ga0209353_10023707
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2874
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039137	Metagenome	164	Y
F045092	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209353_100237073	F045092	GGAGG	MADEITIQLNIDVSSGNYRSSFRPGQISPDMATIRGSDLVQNITTAAFQAIGIGAGVTAGGIYWFRNLDTSTSVTFNPSVQIAMGATNGAGTSTPFLNLRPGEFAMGRCVTTTMCALSSTATANLQFGIMSA
Ga0209353_100237074	F039137	N/A	FELASSRKFDFNEGKPRAERKFIVTGAADESVVIALFGTTLPDQYDNYPNDSGMPYNMLAFTYDITKEPNALETWHVTMKYKAQIIGSGATNPTSTNLVPNEVGYRTARLSMTAEFQDVYRRFASVASMQAAASGTNETTDIGGFSVDVAGIPLSRLHYRQEITILITDQFLPNAQAIAAQIGTRNDASFLNYPLGTVLFAGCNCETIPEVGRNSIEYRFVFDQAFHCLQYPLKGNNASPILLTADSGNLKKGSAQTVLYKQPFTYLTNFSNLSTYFGGL