Scaffold Ga0209353_10001346

Overview

Basic Information

• Taxon OID: 3300027798
• Scaffold ID: Ga0209353_10001346
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13970
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014261	Metagenome	264	Y
F026860	Metagenome	196	Y
F074557	Metagenome / Metatranscriptome	119	Y
F097349	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209353_1000134615	F074557	AGG	MSLVLALSAALLASEAVPEAVVQAVEQVESSGRGSKTPDGDGGKAIGCLQWHSSAWKDCSAIRLKAGLAVYPYSDAKAPIRAREYARTWLTVLKVRLTTQLGRQPFPGEIWLAWNLGWTGFQRYGFSWAFVSRVKFDKARQVNSLAWGLPKRPTVSR
Ga0209353_1000134616	F026860	N/A	MSKPSELIARLMRELTASAEDHPCPAGFSTVEDIRVELRMAHTRNASSRAYDLFRRGLLERKAHQFKAKTGQCHKAYVYKPLPPYRSIREASDGLFAHQADKVPKGWVRVVDYSLDFKLSDVCIRSRISRAGLKPKYWKTPRGIIGLHLNAFYKKSELDRLFAKR
Ga0209353_100013464	F014261	N/A	MKTLLAVIIFGWVIGVTFFGPQIARAINAPEPVKAKTHRVR
Ga0209353_100013465	F097349	N/A	MNHKPTSITDPVRLEAAKELILKHRAKAGPKATYELYGFLFGLRVQIDRVDHAPTSGEFAPLIGKKRIASLFTAYDLVVEFRGVWKTDAEAKVVAWEASNNA