Scaffold Ga0209353_10000435

Overview

Basic Information

• Taxon OID: 3300027798
• Scaffold ID: Ga0209353_10000435
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25433
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (30.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F006659	Metagenome / Metatranscriptome	367	Y
F026553	Metagenome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209353_1000043510	F000957	N/A	MTDFRHLDAMRHLIEDLFFVNERIMTGDIVSAKAAIASTNVKKILTHYHEALSEEGATMISLQVYIAAGGWIGIAYSFELDGCNFEGSQVPRRV
Ga0209353_1000043511	F005588	N/A	MPDPLAHSPDMITIRPNTKPPLWWLFPWSYARTLHISANALKAYVDRLEDMLDLQSRTIKRQAADIAALKQRVRDQDDAIIKGTAITPDAHPHD
Ga0209353_1000043512	F003714	N/A	MPSPNHKWTDTLTVAGRPLTLKRPMAYYAANRLQAILPQIAALNAAGKSQADAAAALGVSLHSLRTWLELTGTAWSNLKRRGPYNISR
Ga0209353_1000043542	F026553	N/A	AWREQPERMESIRVKAITAAKAVKEQKNQRIREAMSAWPSTFDTATLREYILKDFTYKGKLSSLVWRMRRHGMMEFREDGLWHNLCHLPAE
Ga0209353_100004357	F006659	N/A	MKKDPKHSGEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLDDIEATIKAGEVTKSEPTK