Scaffold Ga0209107_10076489

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10076489
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1834
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F009004	Metagenome / Metatranscriptome	324	Y
F015420	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_100764893	F003299	N/A	MCQLKMIAMKMYKVVFKTFDYWNGPVKLVTRIIEAYDRDHVKQLIQKNDDLILLIEEI
Ga0209107_100764894	F003327	GAG	MINEFTQLAIKVQDEIANGDYTHQKYLQFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNDSNEDV
Ga0209107_100764897	F015420	N/A	MKKLINYFTPVGEEQIAFAKALMVVFTAIISILFLFTFLELIS
Ga0209107_100764898	F009004	N/A	MKTFNQILDYLEVQQQEDKLTTNQLHLIIQTLTTFLNKEQLQEIENLFNQFKK